SNP Profiles of HUALLAGA 48 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
1._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
2._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
3._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
4._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
5._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
6._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
7._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
8._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
9._GC-01-009-1-09	AA	AC	CC	AA	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
10._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
11._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
12._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
13._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
14._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
15._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
16._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
17._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
18._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
19._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_
20._HUALLAGA_48	AA	AC	CC	AA	_	_	_	_	CC	CC	GG	_	CT	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
1._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
2._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
3._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
4._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
5._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
6._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
7._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
8._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
9._GC-01-009-1-09	AA	AA	GG	GG	GG	GG	CT	AA	TT	GG	TT	CC	CG	AA
10._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
11._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
12._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
13._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
14._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
15._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
16._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
17._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
18._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
19._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA
20._HUALLAGA_48	_	_	GG	_	_	GG	_	_	_	_	TT	_	CG	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
1._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
2._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
3._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
4._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
5._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
6._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
7._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
8._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
9._GC-01-009-1-09	TT	GG	GG	GG	CC	AG	GT	GG	TT	AA	CC	GG	CC	GG
10._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
11._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
12._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
13._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
14._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
15._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
16._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
17._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
18._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
19._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AA	_	_	_	_
20._HUALLAGA_48	_	_	_	GG	_	AG	GT	_	_	AG	_	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
1._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
2._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
3._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
4._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
5._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
6._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
7._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
8._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
9._GC-01-009-1-09	TT	TT	AA	GG	AG	CC	GG	AG	GG	TT	CT	CC	TT	GG
10._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
11._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
12._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
13._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
14._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
15._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
16._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
17._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
18._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
19._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_
20._HUALLAGA_48	_	TT	_	_	_	_	_	_	_	_	CT	CC	_	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
1._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
2._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
3._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
4._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
5._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
6._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
7._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
8._GC-01-009-1-09	_	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
9._GC-01-009-1-09	GG	CC	TT	AA	GG	GG	CC	AG	GG	TT	AG	TT	CG	AA
10._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
11._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
12._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
13._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
14._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
15._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
16._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
17._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
18._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
19._HUALLAGA_48	_	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA
20._HUALLAGA_48	GG	_	TT	AA	GG	_	CC	AG	GG	TT	_	_	_	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
1._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
2._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
3._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
4._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
5._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
6._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
7._GC-01-009-1-09	CT	CC	GG	CC	_	AA	CC	GG	CC	AA	AC	CC	CT	CC
8._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
9._GC-01-009-1-09	CT	CC	GG	CC	AC	AA	CC	GG	CC	AA	AC	CC	CT	CC
10._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
11._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
12._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
13._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
14._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
15._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
16._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
17._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
18._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
19._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC
20._HUALLAGA_48	CT	_	_	_	_	_	CC	GG	_	_	_	CC	CT	CC

	85	86	87	88	89	90	91	92
_Input profile	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-009-1-09	TT	AA	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-009-1-09	TT	_	CC	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
11._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
12._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
13._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
14._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
15._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
16._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
17._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
18._HUALLAGA_48	_	_	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
19._HUALLAGA_48	_	AA	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
20._HUALLAGA_48	_	AA	_	TT	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: HUALLAGA_48 GC-01-009-1-09

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

1._HUALLAGA_48 GC-01-009-1-09

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP3

2._HUALLAGA_48 GC-01-009-1-09

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

3._HUALLAGA_48 GC-01-009-1-09

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._HUALLAGA_48 GC-01-009-1-09

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

5._HUALLAGA_48 GC-01-009-1-09

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._HUALLAGA_48 GC-01-009-1-09

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._HUALLAGA_48 GC-01-009-1-09

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

8._HUALLAGA_48 GC-01-009-1-09

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._HUALLAGA_48 GC-01-009-1-09

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 3

Dapeng Zhang, 2016

12._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 8

Dapeng Zhang, 2016

13._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 9

Dapeng Zhang, 2016

14._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 10

Dapeng Zhang, 2016

15._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 11

Dapeng Zhang, 2016

16._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 14

Dapeng Zhang, 2016

17._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 16 > F

Dapeng Zhang, 2016

18._HUALLAGA_48

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 1 > FP

Dapeng Zhang, 2016

19._HUALLAGA_48

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 5

Dapeng Zhang, 2016

20._HUALLAGA_48

97.4 %
39 shared markers

View View all Clone Any

PERICT

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240